Low FODMAP salsa is one of those recipes I tested over and over until it was actually worth making. I was tired of reading salsa labels and putting the jar back on the shelf, so I rebuilt the version I used to love before my low FODMAP days and swapped in green onion tops and garlic-infused olive oil so nobody misses a thing. My family makes a batch every week now, and it disappears fast.

The hardest part of eating low FODMAP is watching foods you loved become off-limits. Salsa was one of those for me. Onions and garlic are hiding in almost every jarred version, and even the ones that look simple often sneak in high fructose corn syrup. Ask me how many labels I've read in the chip aisle.
This recipe came out of wanting real salsa back, not a sad substitute. Here's what makes it work:
- Green onion tops are low FODMAP certified by Monash University. The white bulb is not, so only the green parts go in here.
- Garlic salt or garlic-infused olive oil delivers that savory depth without the fructans.
- Opening a can of whole peeled tomatoes is one of the best shortcuts in the kitchen. The peeling is already done for you, the tomatoes are packed at peak ripeness, and they go straight into the blender. Zero fuss, big flavor.
If you want to build out a full low FODMAP snack spread, my low FODMAP guacamole and corn tortilla chips pair perfectly with this one. My low FODMAP taco seasoning uses the same logic if you want to keep the momentum going.
Jump to:
Why You'll Love This Recipe
- Uses pantry ingredients you probably already have
- Easily customize the heat level to your needs
- Gluten free, dairy free, and low FODMAP
- Ready in 10 minutes flat
- Tastes just like restaurant salsa
What You'll Need
A few notes on the ingredients that matter most here.

- Whole Peeled Canned Tomatoes - This is what gives homemade salsa that deep, rich tomato flavor you get at restaurants. Whole tomatoes contain nothing but the tomatoes and their own juices. No fillers, no additives.
- Diced Tomatoes with Green Chilis - Also known as Rotel. It comes in mild, original, and hot. Choose your heat level based on how spicy you want to go.
- Low FODMAP Garlic Salt - Smoke and Sanity makes a certified low FODMAP garlic salt that delivers all the garlic flavor without the actual garlic. It is a must-have for this recipe. You can find it on Amazon.
- Green Onion Tops - Use only the green tops. That is where all the low FODMAP onion flavor lives. The white and light green parts are high FODMAP, so they get skipped entirely.
- Fresh Jalapeno - All the heat is in the seeds and white membranes. Remove them for a milder salsa. Leave them in if you like a kick.
- Fresh Cilantro - It adds a bright, fresh flavor that makes this salsa taste alive. If cilantro tastes like soap to you (you know who you are), swap in fresh parsley instead.
- Lime Juice - Fresh is best. It brings balance to all the bold flavors and brightens everything up.
See the recipe card for the exact measurements and complete instructions.
Selected ingredients are based on guidance on current serving sizes measured by the Monash University Food App and FODMAP Friendly App at the time of publishing. As always, follow your gut and modify as needed.
Step-By-Step Instructions

Step 1: Break out a food processor or blender. Grab a can opener while you're at it.
Remove the stem from the jalapeno and roughly chop it. Add the jalapeno, green onion tops, and cilantro to the food processor first. Pulse two times. Doing this step first means no big chunks of jalapeno hiding in the salsa later.

Step 2: Add the whole peeled canned tomatoes (do not drain), diced tomatoes with green chilis (Rotel), low FODMAP garlic salt, sugar, cumin, and lime juice.

Step 3: Pulse until the salsa reaches the consistency you want. More pulses for smooth salsa, fewer pulses for chunky. You are in control here.

Step 4: This is the MOST important step. Open a bag of tortilla chips and taste the salsa. Needs more lime? Add it. More salt? Go for it. Just add in small amounts because it is really hard to take flavors away once they are in.
Step 5: Transfer to an airtight container and refrigerate for at least an hour before serving. Letting the flavors meld together makes a big difference. Worth the wait.
Tips and Tricks
No food processor? A high-speed blender works just as well. If you only have a small food processor, blend in batches and stir everything together at the end. Make it work!
Taste the salsa with the actual tortilla chips you plan to serve it with. Different chips have different salt levels. Adjust accordingly.
Fresh cilantro when it is in season makes such a difference here. If you can grab a bunch from the farmer's market, do it. While you're at it, grab an extra bunch and make oven baked cilantro lime rice to go alongside your next taco night.
Make it ahead. This salsa tastes even better the next day after the flavors have had time to develop in the refrigerator.
Ingredient Swaps
- Tomatoes - If you cannot find whole tomatoes, my sister has successfully used diced tomatoes. The salsa may be on the chunkier side, but it will work!
- Tomatoes and Green Chilies - If you cannot find Rotel, use a can of diced tomatoes and a small can of green chilies.
- Garlic Flavor - If you do not have the low FODMAP garlic salt, swap in a tablespoon or two of garlic infused olive oil. Add ½ teaspoon of kosher salt since the garlic oil does not have any salt.
Variations
Mild Low FODMAP Salsa: Remove the seeds and membranes from the jalapeno before adding it. Use mild Rotel. You get all the jalapeno flavor without the fire.
Mexi-Ranch Dip: Use this salsa as a base for my low FODMAP Mexican ranch dressing. It makes a creamy, taco-inspired dipping sauce that is so good on everything from quesadillas to burgers.
Spicy Salsa: Leave the jalapeno seeds and membranes in and use the hot Rotel. My teens love this version. I make it mild for myself. Everybody wins.
Reader Love
"So quick and easy and it tastes DELICIOUS! Definitely my go to recipe for salsa!!"
- Megan
⭐⭐⭐⭐⭐

Storing and Freezing
Store: Keep the salsa in an airtight container in the refrigerator for up to seven days. It is so strange how quickly it disappears in my house.
Freeze: If you have leftover salsa getting close to the end of its shelf life, freeze it. Frozen salsa loses its texture for dipping but works great as a marinade for chicken or in shredded chicken dishes.
Low FODMAP Notes
Low FODMAP ingredient information is based on the Monash University Food App and FODMAP Friendly App testing results as of the day posted. Modify based on your gut and what works for you on a low FODMAP diet.
- Whole Tomatoes - Monash has not specifically tested canned whole tomatoes, but common tomatoes have been tested safe at ½ tomato or 65 grams per meal.
- Diced Tomatoes with Green Chilis (Rotel) - Tomatoes are tested as above. Canned green chilis are tested safe at 28 grams per meal.
- Green Onion Tops - Use only the tops. Monash tested them safe at 1 ½ cups per meal. Plenty of onion flavor within safe limits.
- Ground Cumin - Safe at 1 teaspoon per meal.
- White Granulated Sugar - Safe at ¼ cup per meal.
- Low FODMAP Garlic Salt - Certified safe by Monash University. All the garlic flavor, none of the fructans.
- Fresh Jalapeno - Safe at one small chili or 30 grams per meal. Remove the seeds and membranes for less spice and heat.
- Lime Juice - Safe at 1 tablespoon or 21 grams per meal.
- Fresh Cilantro - Safe at 1 cup per meal.
For additional information on a low FODMAP diet, please visit Monash University or FODMAP Friendly. Both have websites and apps for additional guidance and testing results.
If you are building out your low FODMAP recipe rotation, there are plenty of low FODMAP recipes here to explore.
Where To Buy Low FODMAP Salsa
Sometimes you need salsa and you need it right now. No food processor, no time, no energy. These are the store-bought options I actually trust and keep on hand for those nights.
Smoke and Sanity Salsa - They make both a mild and medium version, and both are certified low FODMAP by Monash University. No garlic powder, no onion powder hiding in the ingredients. Just salsa you can actually eat.
FODY Foods Salsa - Another certified low FODMAP option that is easy to find online. FODY also makes a salsa verde if you want to mix things up.
FAQs
It can be! Traditional salsa usually has garlic and onion, which are high FODMAP. This low FODMAP salsa recipe swaps those out for low FODMAP garlic salt and just the green tops of green onions so you get all the flavor without the triggers.
If you want to use fresh tomatoes, make a low FODMAP pico de gallo instead. Fresh tomatoes have more water content and will make the salsa watery if swapped in directly.
Whole canned tomatoes. Restaurants use them, and they give salsa a much deeper, richer tomato flavor than fresh or pre-diced tomatoes.
Yes! Smoke and Sanity makes both a mild and medium salsa that is low FODMAP certified. FODY Foods also has a salsa option. Check labels carefully for garlic powder or onion powder hiding in the ingredients list.
Pour the canned tomatoes and Rotel through a fine mesh sieve and drain the excess liquid before adding them to the food processor.
Yes. Swap fresh cilantro for fresh flat-leaf parsley. It gives a different but still fresh, herby flavor.
How To Use Low FODMAP Salsa
Beyond the classic tortilla chip situation (which is a perfectly valid way to enjoy salsa, always), this salsa works great in so many ways.
- Spoon it over low FODMAP tacos for a quick weeknight dinner
- Add it as a topping for chicken flautas or taco pie
- Drizzle it alongside lime crema for a full taco spread
- Stir it into scrambled eggs for a fast breakfast upgrade
- Mix it into rice bowls for an easy flavor boost
It works like a charm in just about anything that needs a little something extra.
More Loveable Salsa Recipes
Love This Recipe?
Leave a ⭐⭐⭐⭐⭐ rating + comment. It helps so much, and we love hearing from everyone! Thank You -Venessa
Recipe

Low FODMAP Salsa
Equipment
Ingredients
- 1 medium sized jalapeno pepper (Note 1)
- 6 stalks green onion tops (Note 2)
- 1 cup fresh cilantro leaves about a bunch
- 28 ounces canned whole tomatoes
- 2 10 ounces diced tomatoes and green chilis like Rotel
- 1 teaspoon low FODMAP garlic salt (Note 3)
- 1 teaspoon white granulated sugar
- 1 teaspoon ground cumin
- ½ teaspoon kosher salt
- 1 fresh lime, juiced
Instructions
- Remove the stem from the jalapeno. For less heat, remove the seeds and membranes. Roughly chop the jalapeño, then add it to a food processor or blender with the green onion tops and cilantro. Pulse twice.
- Add the whole tomatoes, diced tomatoes with green chiles, low FODMAP garlic salt, sugar, cumin, and lime juice. Pulse until the salsa reaches your desired consistency. Pulse less for a chunkier salsa or more for a smoother salsa.
- Taste the salsa with a tortilla chip and adjust seasonings as needed.
- Refrigerate in an airtight container. Allow flavors to meld for at least an hour before serving.








Megan says
So quick and easy and it tastes DELICIOUS! Definitely my go to recipe for salsa!!
Venessa says
There is no other salsa in our world either, well maybe corn salsa or pico de gallo... but this is our go to TOMATO salsa 🙂 Thank you for taking the time to let us know.
Trina says
This is amazing salsa! I didn’t other with the garlic, and did add a little bit more salt. I only used one small can of tomatoes instead of two, a small can of green chilies, and a pablano pepper instead of jalapeño. I used what I had on hand, saving myself a trip to the store. Thank you for this recipe and recommendations.
Trina
Venessa Mandelkow says
Hi Trina! I love that you used what you had, it's such a great way to save time, money and a trip to the grocery store! Thanks for taking time to leave a comment. I love reading them. - Venessa
Erica G says
Do you think this will freeze well? I also have to avoid histamine so I can only eat things fresh (or if frozen when fresh).
Venessa Mandelkow says
Hi Erica! I have never tried but as a marinade for chicken with any leftovers. I would try it, and then add a bit of fresh lime juice and chopped cilatnro to brighten up the flavors after it is defrosted. I do think it would work. Let me know if you try it! - Venessa